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Medals | | Club | I | II | III | Competitors |
|---|
| 1. | Tartu Do | 12 | 4 | 5 | 29 |
| 2. | Audentese Spordiklubi | 4 | 6 | 5 | 25 |
| 3. | Spordiklubi Ookami | 4 | 1 | 1 | 9 |
| 4. | Kohtla-Jarve Kalev | 3 | 2 | 1 | 12 |
| 5. | Aitado | 1 | 1 | 2 | 12 |
| 5. | Spordiklubi Barra | 1 | 1 | 2 | 6 |
| 7. | Budolinn | 1 | 1 | 1 | 9 |
| 8. | Mikado | 1 | 0 | 1 | 4 |
| 9. | Kibuvits Judo | 0 | 2 | 1 | 4 |
| 10. | Toni Judokool EST | 0 | 2 | 0 | 8 |
| 11. | Samurai | 0 | 1 | 4 | 10 |
| 12. | SK Byakko | 0 | 1 | 3 | 5 |
| 13. | Energia/Buffen-Do | 0 | 1 | 2 | 8 |
| 14. | Spordiklubi Altia | 0 | 1 | 1 | 3 |
| 14. | Võru Judoklubi REI | 0 | 1 | 1 | 6 |
| 16. | M-Dojo Spordiklubi | 0 | 1 | 0 | 1 |
| 17. | Viljandi Spordiklubi Taifu | 0 | 0 | 1 | 2 |
| 18. | Dodze | 0 | 0 | 0 | 2 |
| 18. | Dokyo | 0 | 0 | 0 | 2 |
| 18. | Saaremaa Spordikool | 0 | 0 | 0 | 1 |
| 18. | SK Dvigatel | 0 | 0 | 0 | 1 |
| 18. | sk zen | 0 | 0 | 0 | 4 |
| 18. | Spordiklubi NAISS | 0 | 0 | 0 | 1 |
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