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Medals | | Club | I | II | III | Competitors |
|---|
| 1. | Audentese Spordiklubi | 8 | 7 | 11 | 39 |
| 2. | Budolinn | 4 | 4 | 0 | 16 |
| 3. | Aitado | 4 | 3 | 3 | 18 |
| 4. | Tartu Do | 3 | 7 | 5 | 29 |
| 5. | Kohtla-Jarve Kalev | 3 | 1 | 2 | 6 |
| 6. | Energia/Buffen-Do | 1 | 2 | 1 | 7 |
| 7. | Toni Judokool EST | 1 | 1 | 2 | 9 |
| 8. | Spordiklubi Barra | 1 | 1 | 0 | 7 |
| 8. | Võru Judoklubi REI | 1 | 1 | 0 | 5 |
| 10. | Samurai | 1 | 0 | 2 | 10 |
| 11. | Spordiklubi Altia | 1 | 0 | 1 | 3 |
| 12. | Spordiklubi Ookami | 0 | 1 | 0 | 7 |
| 13. | Kibuvits Judo | 0 | 0 | 3 | 7 |
| 14. | Dokyo | 0 | 0 | 2 | 7 |
| 15. | Mikado | 0 | 0 | 1 | 3 |
| 15. | sk zen | 0 | 0 | 1 | 2 |
| 15. | Tartu Valla Spordiklubi | 0 | 0 | 1 | 3 |
| 15. | Viljandi Spordiklubi Taifu | 0 | 0 | 1 | 3 |
| 19. | Dodze | 0 | 0 | 0 | 1 |
| 19. | SK Zen | 0 | 0 | 0 | 1 |
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